This program has various visual analysis interfaces such as "Search Filter" that filters analysis results based on your condition without complicate programming languages, and "Fragment Match" that confirms assignments between peak and estimated molecular mass of amino acid. If you apply add-ons to the Server edition, you can also control other proteomic analysis programs and compare analysis results.

   Characteristic of mass spectrometry, enzyme (protease) and post transrational modification are set up easily through GUI. Installation of latest and customized sequence database for analysis and add-ons that provide additional functions are also controlled using GUI. You do not need to ask system administrator or programmer to manage little configuration changes anymore.

   The algorithm for protein identification relates to various parameters such as measurement condition, instrument type, sequence length, and so on. Because there is no perfect algorithm that care about the all conceivable parameters, user should have opportunity to evaluate analysis results. ProteomicSuite™ provides Data mining interface that provides 3D plot of the selected parameters. This interface allows you to evaluate analysis results and help you discover essential results from various aspects.

   Customization services of ProteomicSuite™ to supplement and/or change required functions for analysis are provided by request. For instance, customization provides more accurate and higher speed analysis due to sequence database refinement, more concrete reviews due to supplementation of annotation database, more detail validations due to supplementation of experimental information as result column, and so on. In short, customization provides the refinement of ProteomicSuite™ that can be designed by your R&D.
   As this customization is based on developed ProteomicSuite™ interfaces and stored data in RDBMS, it provides useful tool for your R&D by low cost and at short times.

   Protein identification algorithm in ProteomicSuite™ calculates identification score by comparing not only the estimated fragment molecular mass based on peptide sequence and observed peaks, but also the relation between observed ion intensity and peak distribution that varies between different instruments.
   This software does not filter out identification results, but calculates as much as possible, and lists comprehensive results to avoid false positive and true negative output. In this case, the utilization of "Search Filter" with other analysis results allows discovery of essential results from comprehensive results.

   Applying add-ons associated with your own protein identification software such as MASCOT® (Matrix Science Ltd.) and X! Tandem (The Global Proteome Machine Organization), ProteomicSuite™ processes its analysis algorithm and other algorithms on your own software at the same time. Once all of processes are completed, you can compare and merge them to evaluate these results by versatile interfaces of ProteomicSuite™.
   Not only protein identification but also de novo sequencing method and quantification method will be available as executable add-ons for ProteomicSuite™ (2008 or later). If you need system back up and PC cluster for analysis speed-up, these will also be available as add-ons.

   Analysis results or filtered result by "Search Filter" can be exported as a report. Output format is tab delimited text, PDF, Excel, CSV and Rich Text format.